PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G02560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 316aa    MW: 34911.2 Da    PI: 7.7186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G02560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.46.1e-49191453128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPt+eel+++yL + v gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+ 
  OGLUM03G02560.1  19 PGFRFHPTEEELLDFYLSRVVLGKKLHF-NIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGNGGRPNRTTERGFWKATGSDRAIRSSg 111
                      9*************************99.89***************888999****************************************97 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++glkktLvfy+grap+g+ktdWvm+eyrl
  OGLUM03G02560.1 112 dPKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 145
                      66778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5811170IPR003441NAC domain
PROSITE profilePS5100555.55217170IPR003441NAC domain
PfamPF023658.4E-2519145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAAAVAVAGP SMEVEQDLPG FRFHPTEEEL LDFYLSRVVL GKKLHFNIIG TLNIYRHDPW  60
DLPGMAKIGE REWYFFVPRD RKAGNGGRPN RTTERGFWKA TGSDRAIRSS GDPKRVIGLK  120
KTLVFYQGRA PRGTKTDWVM NEYRLPDYGA ARAAAPPPKE DMVLCKIYRK ATPLKELEQR  180
ASAMEEMQRG SSHGDYTATR ASPVHDASAS TGDDYFSSDD VHDSGFLIQS SSSSAAPSGS  240
SSKNGGAGAP REAKKEEADV TVTVASATSL QLPAVSQLPS LQLPAMDWLQ DPFLTQLRSP  300
WQDQHCLSPY AHLLYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B6e-501917219167NAC domain-containing protein 19
4dul_A6e-501917219167NAC domain-containing protein 19
1ut7_B6e-501917219167NO APICAL MERISTEM PROTEIN
1ut7_A6e-501917219167NO APICAL MERISTEM PROTEIN
1ut4_B6e-501917219167NO APICAL MERISTEM PROTEIN
1ut4_A6e-501917219167NO APICAL MERISTEM PROTEIN
3swp_D7e-501917222170NAC domain-containing protein 19
3swp_C7e-501917222170NAC domain-containing protein 19
3swp_B7e-501917222170NAC domain-containing protein 19
3swp_A7e-501917222170NAC domain-containing protein 19
3swm_D7e-501917222170NAC domain-containing protein 19
3swm_C7e-501917222170NAC domain-containing protein 19
3swm_B7e-501917222170NAC domain-containing protein 19
3swm_A7e-501917222170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630174.10.0PREDICTED: NAC domain-containing protein 67-like
SwissprotQ9FIW57e-57NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A0D9Z1P60.0A0A0D9Z1P6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011514-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os03g04070.10.0(Oryza sativa Japonica Group)
STRINGORGLA03G0024300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-88NAC domain containing protein 36